Analysis
CNVIntegrate uses the human assembly GRCh37.

Aim Discover candidate genes that best represents population or cancer specific CNV.
How We perform pairwise comparisons to identify CNV overlapped genes that might be significantly more or less common in your dataset.
Steps Pick your datasets to be compared with Upload your data Confirm job submission

1. Pick datasets

Pick datasets to be compared with.
We allow up to the selection of 3 datasets per job submission including both datasets from healthy populations (TWCNV and ExAC) along with one cancer type.

Control dataset

Cancer dataset

2. Upload csv data

We accept data file in csv format and it should contain the following header:

GENE,GAIN,LOSS,SIZE

GENE HGNC gene symbol
GAIN Sample count with CNV duplication detected
LOSS Sample count with CNV deletion detected
SIZE The tested sample size

Need help? Click for clarification or Download sample file